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qiime2-amplicon

by Scientific Skills

Processes paired-end 16S amplicon reads into QIIME 2 ASVs and taxonomy with retained artifact provenance. Validates paired FASTQ manifests, primer orientation, post-trimming read overlap, sample metadata, classifier compatibility, and per-sample read retention.

v1.0.0New

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Run this command in your terminal. No account required — it auto-detects your AI tool and installs the skill file.

npx @skills-hub-ai/cli install scientific-skills-qiime2-amplicon
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Claude Code

~/.claude/skills/<skill>/SKILL.md

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One-click setup for your editor

Run in your project root

npx @skills-hub-ai/cli install scientific-skills-qiime2-amplicon --target claude-code
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Frequently asked questions about qiime2-amplicon

What does the qiime2-amplicon skill do?

Processes paired-end 16S amplicon reads into QIIME 2 ASVs and taxonomy with retained artifact provenance. Validates paired FASTQ manifests, primer orientation, post-trimming read overlap, sample metadata, classifier compatibility, and per-sample read retention. It's a reusable SKILL.md instruction set that loads into your AI coding assistant on demand, no prompt engineering, no copy-pasting every session.

How do I install the qiime2-amplicon skill?

Run `npx @skills-hub-ai/cli install scientific-skills-qiime2-amplicon` from your terminal. The CLI writes the SKILL.md to the correct location for your AI tool (e.g. ~/.claude/skills/scientific-skills-qiime2-amplicon/ for Claude Code or ~/.cursor/skills/ for Cursor with --target cursor) and adds it to your project's .skills.json lockfile.

Which AI tools does qiime2-amplicon work with?

qiime2-amplicon runs in Claude Code. It follows the open Agent Skills standard (SKILL.md), so the same skill works in every supported tool without modification.

Is the qiime2-amplicon skill free?

Yes. Every skill on skills-hub.ai is free and open-source. There are no premium tiers, paywalls, or usage limits. You only pay for whatever AI assistant you're already using.

How do I use qiime2-amplicon after installing it?

In Claude Code, type `/scientific-skills-qiime2-amplicon` (or whatever slash command the skill registers) and the AI follows the skill's instructions immediately. You can also reference it by name in natural language, your AI loads the skill into context when relevant.

Can I share the qiime2-amplicon skill with my team?

Yes. Commit your project's .skills.json lockfile and teammates run `npx @skills-hub-ai/cli install` (no args) to install every skill at the exact version you pinned. Organization-scoped installs work via skills-hub.ai organizations.